The list of
bioinformatics
Bioinformatics () is an interdisciplinary field that develops methods and software tools for understanding biological data, in particular when the data sets are large and complex. As an interdisciplinary field of science, bioinformatics combi ...
software tools can be split up according to the license used:
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List of proprietary bioinformatics software
This is a list of computer software which is made for bioinformatics and is developed under proprietary licenses with articles in Wikipedia.
See also
* List of sequence alignment software
* List of open-source bioinformatics software
* List ...
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List of open-source bioinformatics software
This is a list of computer software which is made for bioinformatics and released under open-source software licenses with articles in Wikipedia.
See also
* List of sequence alignment software
* List of open-source healthcare software
* List ...
Alternatively, here is a categorization according to the respective bioinformatics subfield specialized on:
*Sequence analysis software
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List of sequence alignment software
This list of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence alignment. See structural alignment software for structural alignment of proteins.
Database searc ...
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List of alignment visualization software
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Alignment-free sequence analysis In bioinformatics, alignment-free sequence analysis approaches to molecular sequence and structure data provide alternatives over alignment-based approaches.
The emergence and need for the analysis of different types of data generated through biolo ...
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De novo sequence assemblers De novo sequence assemblers are a type of program that assembles short nucleotide sequences into longer ones without the use of a reference genome. These are most commonly used in bioinformatic studies to assemble genomes or transcriptomes. Two com ...
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List of gene prediction software
This is a list of software tools and web portals used for gene prediction.
See also
* Gene prediction
* List of RNA structure prediction software
* Comparison of software for molecular mechanics modeling
References
{{Reflist, 2
Predicti ...
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List of disorder prediction software
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List of Protein subcellular localization prediction tools
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List of phylogenetics software
This list of phylogenetics software is a compilation of computational phylogenetics software used to produce phylogenetic trees. Such tools are commonly used in comparative genomics, cladistics, and bioinformatics. Methods for estimating phylogenie ...
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List of phylogenetic tree visualization software
This list of phylogenetic tree viewing software is a compilation of software tools and web portals used in visualizing phylogenetic trees.
Online software
Desktop software
1 "All" refers to Microsoft Windows, Apple OSX and Linux; L=Linux, M=Ap ...
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:Metagenomics_software
*Structural biology software
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List of molecular graphics systems
This is a list of notable software systems that are used for visualizing macromolecules.
Key
The tables below indicate which types of data can be visualized in each system:
See also
* Biological data visualization
* Comparison of nucleic ...
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List of protein-ligand docking software
The number of notable protein-ligand docking programs currently available is high and has been steadily increasing over the last decades. The following list presents an overview of the most common notable programs, listed alphabetically, with ...
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List of RNA structure prediction software
This list of RNA structure prediction software is a compilation of software tools and web portals used for RNA structure prediction.
Single sequence secondary structure prediction.
Single sequence tertiary structure prediction
Comparative me ...
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List of software for protein model error verification
This list of software for protein model error verification is a compilation of bioinformatics software frequently employed to check experimental and theoretical models of protein structure
Protein structure is the three-dimensional arrangement ...
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List of protein secondary structure prediction programs List of notable protein secondary structure prediction programs
See also
* List of protein structure prediction software
* Protein structure prediction
Protein structure prediction is the inference of the three-dimensional structure of a prot ...
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List of protein structure prediction software
This list of protein structure prediction software summarizes notable used software tools in protein structure prediction, including homology modeling, protein threading, ''ab initio'' methods, Protein structure prediction#Secondary structure, se ...
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:Molecular dynamics software
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Structural alignment software
*Other
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Bioinformatics workflow management system
A bioinformatics workflow management system is a specialized form of workflow management system designed specifically to compose and execute a series of computational or data manipulation steps, or a workflow, that relate to bioinformatics.
Ther ...
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List of genetic engineering software
This article provides a list of genetic engineering software.
Cloud-based freemium software
VarstationNGS variants processing and analysis tool
BaseSpace Variant Interpreterby Illumina
Closed-source software
* BlueTractorSoftware DNADynamo
* Ag ...
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List of systems biology modelling software Systems biology relies heavily on building mathematical models to help understand and make predictions of biological processes. Specialized software to assist in building models has been developed since the arrival of the first digital computers. Th ...
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2D gel analysis software
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List of mass spectrometry software